MRIQC: individual T1w report

Summary

  • BIDS filename: sub-3047_ses-2_T1w.
  • Date and time: 2022-11-01, 20:33.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.6347148296517877
cnr2.136600622610504
efc0.615229072531583
fber1953.2215608697175
fwhmavg4.19508
fwhmx4.13479
fwhmy4.66163
fwhmz3.78882
icvscsf0.20782836877333688
icvsgm0.41077092136962806
icvswm0.38140070985703506
inumed1.5416147708892822
inurange0.7242982506752014
qi10.0
qi20.004077906820184708
rpvecsf26.073817954118518
rpvegm13.558108494954555
rpvewm17.3576956838797
sizex176
sizey256
sizez256
snrcsf3.4885625996377114
snrgm10.354447794246358
snrtotal10.99971471247307
snrwm19.156133743535136
snrdcsf33.97941849184402
snrdgm73.1338764536887
snrdtotal66.17612092213267
snrdwm91.41506782086527
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk9.526539147515464
summarybgmad7.166612616060256
summarybgmean16.128526720241336
summarybgmedian14.650919437408447
summarybgn2413191.0
summarybgp054.9334728717803955
summarybgp9530.99616289138794
summarybgstdv8.127000958500412
summarycsfk25.27503801582188
summarycsfmad84.74334711980529
summarycsfmean393.7874808109115
summarycsfmedian371.7047894001007
summarycsfn24991.0
summarycsfp05265.16170859336853
summarycsfp95603.9766788482666
summarycsfstdv106.54742230833963
summarygmk-0.004177805731134132
summarygmmad75.80355200080228
summarygmmean805.5272458967635
summarygmmedian800.0199341773987
summarygmn18359.0
summarygmp05687.0982217788696
summarygmp95942.652116537094
summarygmstdv77.26130466399772
summarywmk0.10823212390985981
summarywmmad51.12676216818244
summarywmmean1000.0219540292362
summarywmmedian1000.0000011920929
summarywmn213578.0
summarywmp05913.7389755249023
summarywmp951086.0118615627289
summarywmstdv52.20247851222801
tpmoverlapcsf0.16854360699653625
tpmoverlapgm0.4418177902698517
tpmoverlapwm0.49257808923721313
wm2max0.6961464165865466
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime10:43:2.245000
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime3e-06
EchoTime0.00169
FlipAngle7
ImageOrientationPatientDICOM[0.171392, 0.960854, 0.217681, 0.00450827, 0.220183, -0.975448]
ImageOrientationTextSag>Cor(9.7)>Tra(1.9)
ImageType['ORIGINAL', 'PRIMARY', 'OTHER', 'ND', 'NORM', 'MEAN']
ImagingFrequency123.258
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InstitutionalDepartmentNameDepartment
InversionTime1.16
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
NumberOfAverages3
ParallelReductionFactorInPlane2
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingSteps191
PhaseResolution1
PixelBandwidth650
ProcedureStepDescriptionfMRI_STUDIES^MITTAL
ProtocolNametfl_epinav_ME3_1mm_p2
PulseSequenceDetails%CustomerSeq%\tfl_mgh_epinav_ABCD
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE36
RepetitionTime2.17
SAR0.0316096
ScanOptionsIR\PFP\WE
ScanningSequenceGR\IR
SequenceNametfl3d3_16ns
SequenceVariantSK\SP\MP
SeriesDescriptiontfl_epinav_ME3_1mm_p2 RMS
SeriesNumber8
ShimSetting[2631, 5434, -7508, 222, -61, -835, 230, -97]
SliceThickness1
SoftwareVersionssyngo MR E11
SpoilingStateTrue
StationNameMRC35427
TxRefAmp243.159
WipMemBlockPrisma_epi_moco_navigator_ABCD_tfl.prot
md5sum9052d2bd65b1ac0c717b4d14472ecc2a
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.